Previous Next

Diels-Alder Transition State – 1

Author: Max Lehner, Dennis Svatunek





Date:
11.01.2024
Version:
1.0
License:
CC BY-NC
Description:
Transition state between ethylene and 1,3-butadiene
View Code
<script src="https://code.jquery.com/jquery-3.6.0.min.js"></script>

<script src="https://3Dmol.org/build/3Dmol-min.js"></script>

<div style="text-align: center;">
<div id="D0402" style="margin: auto; width: 400px; height: 400px;"></div>
</div>
<script>
(function() {
  $(document).ready(function() {
    var viewer = $3Dmol.createViewer("D0402", {defaultcolors: $3Dmol.elementColors.Jmol});
    var xyz = `16 
    * (null), Energy   -276.0000000  
    C -1.609390 -0.693786 -0.228737  0.40  -0.08   0.13
	C -1.607883  0.696798 -0.229117  0.40   0.08   0.13
	C  0.470743  1.451640  0.498386 -0.36  -0.13  -0.12
	C  1.333020  0.708618 -0.298142 -0.02  -0.05  -0.02
	C  1.331206 -0.711330 -0.298232 -0.02   0.05  -0.02
	C  0.467194 -1.452328  0.498381 -0.36   0.13  -0.12
	H  0.416842  2.547074  0.388711 -0.29  -0.11  -0.07
	H -1.484881  1.251719 -1.170809 -0.08  -0.03  -0.01
	H -2.093806  1.252281  0.588655 -0.03  -0.04  -0.04
	H  0.125301 -1.063021  1.468280  0.13  -0.01   0.12
	H -1.487617 -1.249271 -1.170253 -0.08   0.03  -0.01
	H  0.410763 -2.547633  0.388638 -0.29   0.11  -0.07
	H -2.096750 -1.247686  0.589248 -0.03   0.04  -0.04
	H  0.127519  1.062863  1.468011  0.13   0.01   0.12
	H  1.885070 -1.226223 -1.102955  0.06  -0.01   0.08
	H  1.888224  1.222224 -1.102764  0.06   0.01   0.08
    `; 
    viewer.addModel(xyz, "xyz");
    viewer.vibrate(10, 0.8, true);
    viewer.setStyle({}, {stick: {radius: 0.15}, sphere: {scale: 0.25}});
    viewer.zoomTo();
    viewer.zoom(1.4);
    viewer.setBackgroundColor('#f9f9f9');
    viewer.rotate(80, {x: 1, y: 0, z: 0});
	viewer.setView([0.12027781249999998,-0.0001211874999999113,-0.01795631250000003,130.68219630192718,-0.006246902851450353,0.16876950883486358,0.7346235428630277,0.6571195320212124]);
    viewer.setViewStyle({style: 'outline', color: 'black', width: 0.02});
    viewer.animate({loop: 'backandforth', interval: 100, reps: 0});
    viewer.render();
$("#D0402").css("position", "relative");
  });
})(); 
</script>


Copyright © 2024 Dennis Svatunek.